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TwoSampleMR — R package for two-sample Mendelian randomization using GWAS summary statistics. Extracts genetic instruments from the IEU OpenGWAS database, harmonises exposure and outcome data, and app
Use with AI
Install the MCP server or CLI to instantly fetch TwoSampleMR documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/twosamplemr
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1 shared topic • 2 shared operations
FINEMAP — Bayesian fine-mapping tool for identifying causal variants from GWAS summary statistics and linkage disequilibrium (LD) matrices. Uses shotgun stochastic search to enumerate causal configura
1 shared topic • 2 shared operations
GREML (GCTA) — genome-based restricted maximum likelihood analysis for SNP heritability estimation, genetic correlation, mixed linear model association (MLMA), and COJO conditional analysis. Use when
1 shared topic • 2 shared operations
GWAS Catalog — EBI/NHGRI curated repository of genome-wide association study summary statistics, significant SNP-trait associations, and ancestry metadata. Query trait-SNP associations, download GWAS
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LocusZoom — regional association plot generator for GWAS and fine-mapping results. Creates publication-quality locus zoom plots showing -log10(p-value) vs genomic position with LD coloring, recombinat
1 shared topic • 2 shared operations