Bracken

CNVnator — read-depth (RD) based copy number variation (CNV) detection from whole-genome sequencing BAM/CRAM files. Partitions the genome into equal-size bins, computes normalized read-depth signals,

2 shared topics • 2 shared operations

CNVpytor — Python tool for copy number variation (CNV) detection from whole-genome sequencing (WGS) BAM/CRAM files. Analyzes read depth signals with adjustable bin sizes, calls deletions and duplicati

2 shared topics • 2 shared operations

Use when working with sQTLseekeR — splicing quantitative trait locus (sQTL) mapping using transcript ratio tests. R package that identifies genetic variants (SNPs, indels) associated with changes in s

2 shared topics • 2 shared operations

NanoPlot — visualization and quality-control tool for Oxford Nanopore long-read sequencing data. Generates read length histograms, quality distribution plots, cumulative yield curves, and alignment id

2 shared topics • 1 shared operation

PRINSEQ++ — high-performance C++ tool for quality control and preprocessing of FASTQ sequencing reads. Filters and trims reads by quality score, length, GC content, sequence complexity (DUST/entropy),

2 shared topics • 1 shared operation