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biocontext7 delivers 2,000+ deep skill bundles — structured, hash-verified documentation compiled from live upstream sources — to AI coding agents via the Model Context Protocol (MCP).
Add biocontext7 to your AI coding assistant in one command:
claude mcp add biocontext7 -- npx @biocontext7/mcpAdd to your .cursor/mcp.json:
{
"mcpServers": {
"biocontext7": {
"command": "npx",
"args": [
"@biocontext7/mcp"
]
}
}
}The biocontext7 MCP server exposes 15 registered tools. These are the primary skill-discovery and documentation endpoints AI agents use first:
Semantic search over the deep skill library. Returns ranked skill bundles with install commands, EDAM tags, and token-budgeted content ready for agent consumption.
Example
"viral sequence discovery from metagenomic assemblies"Look up a specific skill bundle by name or keyword. Returns the canonical skill ID with provenance metadata.
Fetch the deep skill bundle content for a specific skill. Supports topic filtering and token-budget control to fit within agent context windows.
Example
"Get scanpy skill, topic: cell clustering, maxTokens: 5000"Additional tools: recommend-tools, recommend-pipeline, compile-pipeline, search-and-get, submit-tool, validate-workflow, search-publications, create-manifest, validate-manifest, seal-manifest, check-type-compatibility, and report-snippet-quality. The full surface is backed by 19 specialist federation servers (Beacon, CELLxGENE, PRIDE, cBioPortal, OpenAlex, Unpaywall, and more).
BioContext7 provides a REST API for programmatic access to tool search, rankings, documentation snippets, and more. Includes interactive "Try it" examples.
View API Documentation →