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FINEMAP — Bayesian fine-mapping tool for identifying causal variants from GWAS summary statistics and linkage disequilibrium (LD) matrices. Uses shotgun stochastic search to enumerate causal configura
Use with AI
Install the MCP server or CLI to instantly fetch FINEMAP documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/finemap
Bracken (Bayesian Reestimation of Abundance with KrakEN) — statistical method for computing species-level abundance estimates from Kraken/Kraken2/KrakenUniq taxonomic classifications. Redistributes re
1 shared topic • 2 shared operations
GREML (GCTA) — genome-based restricted maximum likelihood analysis for SNP heritability estimation, genetic correlation, mixed linear model association (MLMA), and COJO conditional analysis. Use when
1 shared topic • 2 shared operations
GWAS Catalog — EBI/NHGRI curated repository of genome-wide association study summary statistics, significant SNP-trait associations, and ancestry metadata. Query trait-SNP associations, download GWAS
1 shared topic • 2 shared operations
LocusZoom — regional association plot generator for GWAS and fine-mapping results. Creates publication-quality locus zoom plots showing -log10(p-value) vs genomic position with LD coloring, recombinat
1 shared topic • 2 shared operations
Use when performing GWAS fine-mapping with PAINTOR (Probabilistic Annotation INTegratOR). Computes posterior inclusion probabilities (PIPs) for causal variants by integrating summary statistics (Z-sco
1 shared topic • 2 shared operations