LocusZoom

IMPUTE5 for genotype imputation from phased haplotypes and a reference panel. Performs fast, accurate imputation using the Li and Stephens hidden Markov model with the PBWT data structure for efficien

1 shared topic • 3 shared operations

Bracken (Bayesian Reestimation of Abundance with KrakEN) — statistical method for computing species-level abundance estimates from Kraken/Kraken2/KrakenUniq taxonomic classifications. Redistributes re

1 shared topic • 2 shared operations

FINEMAP — Bayesian fine-mapping tool for identifying causal variants from GWAS summary statistics and linkage disequilibrium (LD) matrices. Uses shotgun stochastic search to enumerate causal configura

1 shared topic • 2 shared operations

ggplot2 — grammar of graphics implementation in R for creating complex, layered statistical visualizations. Supports scatter plots, bar charts, histograms, boxplots, heatmaps, faceted plots, and custo

1 shared topic • 2 shared operations

GREML (GCTA) — genome-based restricted maximum likelihood analysis for SNP heritability estimation, genetic correlation, mixed linear model association (MLMA), and COJO conditional analysis. Use when

1 shared topic • 2 shared operations