IMPUTE5

GREML (GCTA) — genome-based restricted maximum likelihood analysis for SNP heritability estimation, genetic correlation, mixed linear model association (MLMA), and COJO conditional analysis. Use when

2 shared topics • 2 shared operations

GWAS Catalog — EBI/NHGRI curated repository of genome-wide association study summary statistics, significant SNP-trait associations, and ancestry metadata. Query trait-SNP associations, download GWAS

2 shared topics • 2 shared operations

Use when working with odgi — the optimized dynamic genome/graph implementation toolkit — for pangenome variation graph manipulation, sorting, visualization, and analysis. Converts GFA graphs to effici

2 shared topics • 2 shared operations

rMVP GWAS analysis for plant genomics. Use when running genome-wide association studies, GWAS models (GLM, MLM, FarmCPU), SNP genotype formatting, kinship matrix calculation, population structure PCA,

2 shared topics • 2 shared operations

SuSiE (Sum of Single Effects) — R package for Bayesian variable selection and fine-mapping of GWAS loci. Fits a sparse regression model to identify credible sets of likely causal variants with posteri

2 shared topics • 2 shared operations