GWAS Catalog

CNVpytor — Python tool for copy number variation (CNV) detection from whole-genome sequencing (WGS) BAM/CRAM files. Analyzes read depth signals with adjustable bin sizes, calls deletions and duplicati

2 shared topics • 2 shared operations

COLOC (coloc) -- R package for Bayesian colocalization analysis of genetic associations. Tests whether two traits share a causal variant at a genomic locus using GWAS summary statistics. Implements co

2 shared topics • 2 shared operations

GREML (GCTA) — genome-based restricted maximum likelihood analysis for SNP heritability estimation, genetic correlation, mixed linear model association (MLMA), and COJO conditional analysis. Use when

2 shared topics • 2 shared operations

Open Targets Genetics — EMBL-EBI/Open Targets portal for GWAS-driven gene prioritisation via Locus-to-Gene (L2G) scoring, fine-mapping, and colocalisation analysis. Query variant-to-gene links, study

2 shared topics • 2 shared operations

SuSiE (Sum of Single Effects) — R package for Bayesian variable selection and fine-mapping of GWAS loci. Fits a sparse regression model to identify credible sets of likely causal variants with posteri

2 shared topics • 2 shared operations