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SuSiE-inf — Bayesian fine-mapping with an infinitely large number of effects. Python implementation extending SuSiE to handle highly polygenic regions by placing a spike-and-slab prior on infinitely m
Use with AI
Install the MCP server or CLI to instantly fetch SuSiE-inf documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/susie-inf
Bracken (Bayesian Reestimation of Abundance with KrakEN) — statistical method for computing species-level abundance estimates from Kraken/Kraken2/KrakenUniq taxonomic classifications. Redistributes re
1 shared topic • 2 shared operations
FINEMAP — Bayesian fine-mapping tool for identifying causal variants from GWAS summary statistics and linkage disequilibrium (LD) matrices. Uses shotgun stochastic search to enumerate causal configura
1 shared topic • 2 shared operations
GREML (GCTA) — genome-based restricted maximum likelihood analysis for SNP heritability estimation, genetic correlation, mixed linear model association (MLMA), and COJO conditional analysis. Use when
1 shared topic • 2 shared operations
GWAS Catalog — EBI/NHGRI curated repository of genome-wide association study summary statistics, significant SNP-trait associations, and ancestry metadata. Query trait-SNP associations, download GWAS
1 shared topic • 2 shared operations
LocusZoom — regional association plot generator for GWAS and fine-mapping results. Creates publication-quality locus zoom plots showing -log10(p-value) vs genomic position with LD coloring, recombinat
1 shared topic • 2 shared operations