Reactome

Use when working with AUCell — an R/Python tool for scoring gene set activity in single cells using the Area Under the Curve (AUC) metric. Computes per-cell activity scores for gene sets (regulons, pa

1 shared topic • 1 shared operation

clusterProfiler — universal enrichment analysis tool for interpreting omics data using Gene Ontology, KEGG pathways, WikiPathways, Reactome, Disease Ontology, and custom gene sets. Implements over-rep

1 shared topic • 1 shared operation

fgsea — fast preranked gene set enrichment analysis in R using an adaptive multi-level split Monte-Carlo scheme for arbitrarily precise GSEA p-values. Provides fgsea(), fgseaMultilevel(), plotEnrichme

1 shared topic • 1 shared operation

KEGG Tools — Kyoto Encyclopedia of Genes and Genomes database access suite for pathway enrichment analysis, gene functional annotation via KEGG Orthology (KO), metabolic pathway reconstruction, and dr

1 shared topic • 1 shared operation

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

1 shared topic • 1 shared operation