fgsea

clusterProfiler — universal enrichment analysis tool for interpreting omics data using Gene Ontology, KEGG pathways, WikiPathways, Reactome, Disease Ontology, and custom gene sets. Implements over-rep

2 shared topics • 1 shared operation

MetaboAnalyst — comprehensive R package and web platform for metabolomics data analysis and interpretation. Provides statistical analysis (t-test, ANOVA, PCA, PLS-DA), pathway analysis (KEGG, SMPDB),

2 shared topics • 1 shared operation

PathVisio biological pathway editor and analysis tool. Draw and edit biological pathways in GPML (Graphical Pathway Markup Language) format. Load gene expression or metabolomics data onto pathways for

2 shared topics • 1 shared operation

MAGeCK-VISPR — comprehensive CRISPR screen analysis framework combining MAGeCK statistical testing (RRA and MLE algorithms) with VISPR interactive visualization. Supports sgRNA count generation from F

2 shared topics

PopART (Population Analysis with Reticulate Trees) — Java-based application for constructing and visualizing haplotype networks from DNA sequence alignments. Supports TCS, Median-Joining, Minimum Span

2 shared topics