clusterProfiler

MetaboAnalyst — comprehensive R package and web platform for metabolomics data analysis and interpretation. Provides statistical analysis (t-test, ANOVA, PCA, PLS-DA), pathway analysis (KEGG, SMPDB),

2 shared topics • 2 shared operations

fgsea — fast preranked gene set enrichment analysis in R using an adaptive multi-level split Monte-Carlo scheme for arbitrarily precise GSEA p-values. Provides fgsea(), fgseaMultilevel(), plotEnrichme

2 shared topics • 1 shared operation

MAGeCK-VISPR — comprehensive CRISPR screen analysis framework combining MAGeCK statistical testing (RRA and MLE algorithms) with VISPR interactive visualization. Supports sgRNA count generation from F

2 shared topics • 1 shared operation

PathVisio biological pathway editor and analysis tool. Draw and edit biological pathways in GPML (Graphical Pathway Markup Language) format. Load gene expression or metabolomics data onto pathways for

2 shared topics • 1 shared operation

Use when working with AUCell — an R/Python tool for scoring gene set activity in single cells using the Area Under the Curve (AUC) metric. Computes per-cell activity scores for gene sets (regulons, pa

1 shared topic • 2 shared operations