KEGG Tools

DOSE — Disease Ontology Semantic and Enrichment analysis R/Bioconductor package for gene set enrichment against disease ontologies. Performs over-representation analysis (ORA) and gene set enrichment

1 shared topic • 2 shared operations

Enrichr — web-based gene set enrichment analysis platform providing instant over-representation analysis against ~300 gene set libraries containing ~400,000 annotated gene sets. Implements Fisher's ex

1 shared topic • 2 shared operations

Gene Ontology (GO) tools for biological annotation, GO enrichment analysis, and ontology-based gene set analysis. Supports downloading and parsing GO ontology files (.obo), gene association files (GAF

1 shared topic • 2 shared operations

STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat

1 shared topic • 2 shared operations

Reactome — curated pathway knowledgebase and analysis platform for pathway enrichment, expression overlay, and species comparison. Use when user needs pathway over-representation analysis (ORA) with R

1 shared topic • 1 shared operation