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DOSE — Disease Ontology Semantic and Enrichment analysis R/Bioconductor package for gene set enrichment against disease ontologies. Performs over-representation analysis (ORA) and gene set enrichment
Use with AI
Install the MCP server or CLI to instantly fetch DOSE documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/dose
dnaplotlib — Python library for programmable visualization of genetic designs and synthetic biology circuits. Renders genetic parts (Promoter, RBS, CDS, Terminator, Spacer) as vector-quality matplotli
2 shared topics • 2 shared operations
Use when visualizing functional enrichment results from clusterProfiler, DOSE, or ReactomePA analyses. Covers all major plot types: dotplot for ORA/GSEA overview, barplot for ranked terms, cnetplot fo
2 shared topics • 2 shared operations
LION/web (Lipid Ontology Web) — ontology enrichment tool for lipidomics data. Translates lipidomics datasets into biological insights using target-list mode (Fisher's exact test) and ranking mode (Kol
2 shared topics • 2 shared operations
Maftools — R package for analyzing somatic mutations from cancer sequencing (MAF files). Provides oncoplots for mutation visualization, clonality analysis, tumor burden estimation, mutational signatur
2 shared topics • 2 shared operations
STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat
2 shared topics • 2 shared operations