Loading homepage
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
Use with AI
Install the MCP server or CLI to instantly fetch Reactome Database documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/reactome-database
BioGRID — curated repository of protein-protein interactions, genetic interactions, chemical interactions, and post-translational modifications from the published literature. Provides REST API (v4+) f
3 shared topics
Use when visualizing, analyzing, or manipulating biological networks with Cytoscape, the industry-standard desktop platform for systems biology and pathway analysis. Covers network import (SIF, XGMML,
3 shared topics
OmniPath and OmnipathR — systems biology prior knowledge database and R client for accessing protein-protein interactions, gene regulatory networks, enzyme-substrate (PTM) relationships, protein compl
3 shared topics
Reactome graph database — EMBL-EBI curated biological pathway knowledgebase with Neo4j graph backend and REST API. Supports pathway enrichment analysis, over-representation testing, graph topology tra
2 shared topics • 1 shared operation
STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat
2 shared topics • 1 shared operation