Cytoscape

BioGRID — curated repository of protein-protein interactions, genetic interactions, chemical interactions, and post-translational modifications from the published literature. Provides REST API (v4+) f

3 shared topics • 1 shared operation

OmniPath and OmnipathR — systems biology prior knowledge database and R client for accessing protein-protein interactions, gene regulatory networks, enzyme-substrate (PTM) relationships, protein compl

3 shared topics • 1 shared operation

Use when working with modelangelo — modelAngelo — automated atomic model

2 shared topics • 2 shared operations

Use when working with NetworkX, graph analysis in Python, biological network analysis, protein-protein interaction networks, gene regulatory networks, metabolic networks, pathway analysis, network top

2 shared topics • 2 shared operations

STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat

2 shared topics • 2 shared operations