ModelAngelo

Use when visualizing, analyzing, or manipulating biological networks with Cytoscape, the industry-standard desktop platform for systems biology and pathway analysis. Covers network import (SIF, XGMML,

2 shared topics • 2 shared operations

ProDy — Python library for protein dynamics analysis and structural bioinformatics. Provides elastic network models (GNM, ANM), principal component analysis (PCA) of structural ensembles and MD trajec

2 shared topics • 2 shared operations

ProteinMPNN — deep learning-based protein sequence design from backbone structures. Uses message passing neural networks to predict amino acid sequences that fold into a given 3D backbone. Supports fi

2 shared topics • 2 shared operations

STELLAR (Spatial TEmporal Learning of cell-type cLAssification on multiple Regions) — graph neural network method for automated cell-type annotation in multiplexed imaging data. Transfers cell-type la

2 shared topics • 2 shared operations

CCP4 — Collaborative Computational Project Number 4 software suite for macromolecular X-ray crystallography. Provides programs for data processing (AIMLESS, POINTLESS), molecular replacement (Phaser),

1 shared topic • 3 shared operations