ProDy

Cytoscape.js — JavaScript graph theory library for network visualization and analysis in the browser and Node.js. Renders interactive biological networks, protein-protein interaction graphs, pathway d

3 shared topics • 1 shared operation

Use when working with modelangelo — modelAngelo — automated atomic model

2 shared topics • 2 shared operations

Use when working with GraphSAGE — Graph Sample and Aggregate — an inductive graph neural network framework for learning node embeddings on large graphs. Applies to biological network analysis: protein

3 shared topics

igraph — Fast, open-source C library with Python, R, and Mathematica interfaces for graph and network analysis. Used in biological network analysis, protein-protein interaction (PPI) networks, gene re

3 shared topics

Query STRING API for protein-protein interaction networks, functional enrichment, and interaction partner discovery. Covers 59M proteins across 5000+ species with 20B+ scored interactions from 7 evide

2 shared topics • 1 shared operation