Reactome Graph

STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat

2 shared topics • 2 shared operations

msigdbr — R package providing MSigDB (Molecular Signatures Database) gene sets as tidy data frames for use in gene set enrichment analysis (GSEA), over-representation analysis (ORA), and pathway analy

1 shared topic • 3 shared operations

HUMAnN 3 — functional profiling pipeline for metagenomic and metatranscriptomic shotgun sequencing data. Quantifies gene families (UniRef90/50), metabolic pathways (MetaCyc), and enzyme reactions via

2 shared topics • 1 shared operation

ProDy — Python library for protein dynamics analysis and structural bioinformatics. Provides elastic network models (GNM, ANM), principal component analysis (PCA) of structural ensembles and MD trajec

2 shared topics • 1 shared operation

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

2 shared topics • 1 shared operation