PLIP (Protein-Ligand Interaction Profiler)

Dash Bio -- interactive bioinformatics visualization components built on Plotly Dash. Provides domain-specific charts including Circos plots, ideograms, needle plots (lollipop/mutation diagrams), alig

2 shared topics • 1 shared operation

Use when working with OmegaFold to predict 3D protein structures from amino acid sequences without multiple sequence alignments (MSA-free). Covers single-sequence structure prediction, batch FASTA pro

2 shared topics • 1 shared operation

PyMOL — molecular visualization system for rendering publication-quality 3D images of protein structures, nucleic acids, small molecules, electron density maps, and volumetric data. Provides interacti

2 shared topics • 1 shared operation

Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.

2 shared topics

AMBER (Assisted Model Building with Energy Refinement) — suite of molecular dynamics simulation programs for biomolecular systems. Provides force fields (ff14SB, ff19SB, GAFF2), system preparation (tl

2 shared topics