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Use when working with OmegaFold to predict 3D protein structures from amino acid sequences without multiple sequence alignments (MSA-free). Covers single-sequence structure prediction, batch FASTA pro
Use with AI
Install the MCP server or CLI to instantly fetch OmegaFold documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/omegafold
BioPython.PDB -- Python module for structural biology and macromolecular structure analysis. Parses PDB and mmCIF files, navigates the Structure-Model-Chain-Residue-Atom (SMCRA) hierarchy, computes at
2 shared topics • 3 shared operations
CCP4 — Collaborative Computational Project Number 4 software suite for macromolecular X-ray crystallography. Provides programs for data processing (AIMLESS, POINTLESS), molecular replacement (Phaser),
2 shared topics • 3 shared operations
Use when working with MolBART — a BART-based sequence-to-sequence transformer for computational chemistry and drug discovery. MolBART is pre-trained on SMILES molecular representations and supports fo
2 shared topics • 3 shared operations
REINVENT4 — AI-driven de novo molecular design platform for drug discovery using reinforcement learning (RL) and generative models. Generate novel SMILES, decorate scaffolds (LibInvent), design linker
2 shared topics • 3 shared operations
Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.
2 shared topics • 2 shared operations