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Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.
Use with AI
Install the MCP server or CLI to instantly fetch AlphaFold documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/alphafold
AMBER (Assisted Model Building with Energy Refinement) — suite of molecular dynamics simulation programs for biomolecular systems. Provides force fields (ff14SB, ff19SB, GAFF2), system preparation (tl
2 shared topics • 2 shared operations
EMBL-EBI (European Bioinformatics Institute) — access bioinformatics databases and analysis services from EMBL-EBI including EBI Search for cross-database discovery, EMBL-EBI Tools Job Dispatcher for
2 shared topics • 2 shared operations
Ensembl Compara — comparative genomics database and API from EMBL-EBI providing pairwise and multiple whole-genome alignments, gene trees, protein families, orthologues, paralogues, and synteny region
2 shared topics • 2 shared operations
Use when working with OmegaFold to predict 3D protein structures from amino acid sequences without multiple sequence alignments (MSA-free). Covers single-sequence structure prediction, batch FASTA pro
2 shared topics • 2 shared operations
Boltz-1 — open-source deep learning model for predicting biomolecular 3D structures and interactions, approaching AlphaFold3-level accuracy. Supports protein, DNA, RNA, and small-molecule ligand struc
1 shared topic • 3 shared operations