AMBER

Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.

2 shared topics • 2 shared operations

EMBL-EBI (European Bioinformatics Institute) — access bioinformatics databases and analysis services from EMBL-EBI including EBI Search for cross-database discovery, EMBL-EBI Tools Job Dispatcher for

2 shared topics • 2 shared operations

Use when working with OmegaFold to predict 3D protein structures from amino acid sequences without multiple sequence alignments (MSA-free). Covers single-sequence structure prediction, batch FASTA pro

2 shared topics • 2 shared operations

OpenMM — high-performance molecular dynamics simulation toolkit with GPU acceleration via CUDA and OpenCL. Provides Python API for building custom simulations, force field support (AMBER, CHARMM, AMOE

1 shared topic • 3 shared operations

PyMOL — molecular visualization system for rendering publication-quality 3D images of protein structures, nucleic acids, small molecules, electron density maps, and volumetric data. Provides interacti

2 shared topics • 1 shared operation