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EMBL-EBI (European Bioinformatics Institute) — access bioinformatics databases and analysis services from EMBL-EBI including EBI Search for cross-database discovery, EMBL-EBI Tools Job Dispatcher for
Use with AI
Install the MCP server or CLI to instantly fetch EMBL-EBI documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/embl-ebi
Dash Bio -- interactive bioinformatics visualization components built on Plotly Dash. Provides domain-specific charts including Circos plots, ideograms, needle plots (lollipop/mutation diagrams), alig
3 shared topics • 1 shared operation
Pfam — database of protein families with curated HMM profiles for domain annotation, functional classification, and evolutionary analysis. Search protein sequences against Pfam-A using HMMER's hmmscan
3 shared topics • 1 shared operation
Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.
2 shared topics • 2 shared operations
AMBER (Assisted Model Building with Energy Refinement) — suite of molecular dynamics simulation programs for biomolecular systems. Provides force fields (ff14SB, ff19SB, GAFF2), system preparation (tl
2 shared topics • 2 shared operations
Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem
2 shared topics • 2 shared operations