Pfam — database of protein families with curated HMM profiles for domain annotation, functional classification, and evolutionary analysis. Search protein sequences against Pfam-A using HMMER's hmmscan
Use with AI
Install the MCP server or CLI to instantly fetch Pfam documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/pfam
EMBL-EBI (European Bioinformatics Institute) — access bioinformatics databases and analysis services from EMBL-EBI including EBI Search for cross-database discovery, EMBL-EBI Tools Job Dispatcher for
3 shared topics • 1 shared operation
Dash Bio -- interactive bioinformatics visualization components built on Plotly Dash. Provides domain-specific charts including Circos plots, ideograms, needle plots (lollipop/mutation diagrams), alig
3 shared topics
Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.
2 shared topics • 1 shared operation
Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem
2 shared topics • 1 shared operation
gffread -- GFF/GTF utility for filtering, converting, and extracting sequences from genome annotation files. Converts between GFF3 and GTF formats, extracts transcript (FASTA) and protein sequences fr
2 shared topics • 1 shared operation