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PyMOL — molecular visualization system for rendering publication-quality 3D images of protein structures, nucleic acids, small molecules, electron density maps, and volumetric data. Provides interacti
Use with AI
Install the MCP server or CLI to instantly fetch PyMOL documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/pymol
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2 shared topics • 2 shared operations
Use when working with OmegaFold to predict 3D protein structures from amino acid sequences without multiple sequence alignments (MSA-free). Covers single-sequence structure prediction, batch FASTA pro
2 shared topics • 2 shared operations
Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.
2 shared topics • 1 shared operation
AutoDock Vina — fast open-source molecular docking engine for predicting protein-ligand binding poses and affinities. Uses gradient-optimization conformational search with Vina, Vinardo, or AutoDock4
2 shared topics • 1 shared operation
DiffDock — diffusion generative model for molecular docking that predicts protein-ligand binding poses. Uses a diffusion process over translations, rotations, and torsion angles to generate and rank d
2 shared topics • 1 shared operation