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p.adjust — Multiple testing p-value correction in base R (stats package). Adjusts a vector of p-values using one of seven methods: Bonferroni, Holm (1979), Hochberg (1988), Hommel (1988), Benjamini-Ho
Use with AI
Install the MCP server or CLI to instantly fetch padjust documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/padjust
Corset — C++ tool for clustering de novo assembled transcripts into gene-level groups and producing gene-level counts for differential expression analysis. Groups contigs from Trinity, Trans-ABySS, or
2 shared topics • 1 shared operation
DRIMSeq is a Bioconductor R package for Differential Transcript Usage (DTU) analysis using a Dirichlet-multinomial distribution to model transcript-level count proportions. Tests whether relative tran
2 shared topics • 1 shared operation
GSEA — Gene Set Enrichment Analysis determines whether a priori defined gene sets show statistically significant, concordant differences between two biological states. Computes enrichment scores via a
2 shared topics • 1 shared operation
salmon — Fast, bias-aware transcript quantification from RNA-seq data using selective alignment to the transcriptome. Supports bulk RNA-seq (mapping-based and alignment-based modes), single-cell RNA-s
2 shared topics • 1 shared operation
TCGAbiolinks for searching, downloading, and analyzing cancer genomics data from the NCI Genomic Data Commons (GDC). Routes tasks for GDCquery/GDCdownload, data preparation with GDCprepare, differenti
2 shared topics • 1 shared operation