GSEA (Gene Set Enrichment Analysis)

Corset — C++ tool for clustering de novo assembled transcripts into gene-level groups and producing gene-level counts for differential expression analysis. Groups contigs from Trinity, Trans-ABySS, or

2 shared topics • 1 shared operation

DRIMSeq is a Bioconductor R package for Differential Transcript Usage (DTU) analysis using a Dirichlet-multinomial distribution to model transcript-level count proportions. Tests whether relative tran

2 shared topics • 1 shared operation

salmon — Fast, bias-aware transcript quantification from RNA-seq data using selective alignment to the transcriptome. Supports bulk RNA-seq (mapping-based and alignment-based modes), single-cell RNA-s

2 shared topics • 1 shared operation

TCGAbiolinks for searching, downloading, and analyzing cancer genomics data from the NCI Genomic Data Commons (GDC). Routes tasks for GDCquery/GDCdownload, data preparation with GDCprepare, differenti

2 shared topics • 1 shared operation

tximeta — R/Bioconductor package for importing transcript-level quantification data from Salmon, alevin, piscem, and other quantifiers with automatic metadata attachment. Automatically identifies the

2 shared topics • 1 shared operation