Tcgabiolinks

EnhancedVolcano — R/Bioconductor package for creating publication-ready volcano plots with enhanced colouring and labeling from differential expression results. Visualize DESeq2, limma, edgeR output w

2 shared topics • 2 shared operations

REDCap (Research Electronic Data Capture) is a secure, web-based application for building and managing online surveys and databases, widely used in clinical and translational research. This skill cove

1 shared topic • 3 shared operations

Corset — C++ tool for clustering de novo assembled transcripts into gene-level groups and producing gene-level counts for differential expression analysis. Groups contigs from Trinity, Trans-ABySS, or

2 shared topics • 1 shared operation

pygenometracks -- Python program and library for plotting publication-quality genome browser tracks. Generates highly customizable visualizations of bigwig, BED, GTF, bedgraph, Hi-C matrices, links/ar

2 shared topics • 1 shared operation

salmon — Fast, bias-aware transcript quantification from RNA-seq data using selective alignment to the transcriptome. Supports bulk RNA-seq (mapping-based and alignment-based modes), single-cell RNA-s

2 shared topics • 1 shared operation