Drimseq

Use when working with stageR, the Bioconductor R package for stage-wise testing in RNA-seq transcriptomics. Covers two-stage testing workflows for differential expression (DESeq2/edgeR/limma-voom) and

3 shared topics • 1 shared operation

Trinity — de novo transcriptome assembler for RNA-seq data. Reconstructs full-length transcript isoforms without a reference genome using three sequential modules: Inchworm (greedy k-mer assembly), Ch

3 shared topics • 1 shared operation

RNAcentral is the comprehensive non-coding RNA sequence database aggregating sequences from 40+ expert databases (miRBase, Rfam, lncRNAdb, Ensembl, HGNC, GENCODE, and more) under unified URS identifie

2 shared topics • 2 shared operations

salmon — Fast, bias-aware transcript quantification from RNA-seq data using selective alignment to the transcriptome. Supports bulk RNA-seq (mapping-based and alignment-based modes), single-cell RNA-s

2 shared topics • 2 shared operations

tximeta — R/Bioconductor package for importing transcript-level quantification data from Salmon, alevin, piscem, and other quantifiers with automatic metadata attachment. Automatically identifies the

2 shared topics • 2 shared operations