In-silico PCR (isPCR) simulates PCR amplification computationally by searching a genome or sequence database for products defined by primer pairs. Use for primer specificity checking, amplicon predict
Use with AI
Install the MCP server or CLI to instantly fetch In-Silico PCR documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/in-silico-pcr
nf-core/viralrecon — Nextflow pipeline for viral genome reconstruction and analysis from sequencing data. Supports Illumina and Oxford Nanopore reads for SARS-CoV-2, influenza, and other viral genomes
2 shared topics • 2 shared operations
Use when building, querying, or manipulating colored compacted de Bruijn graphs (ccDBG) with Bifrost for genome assembly, metagenomics, variant detection, or k-mer analysis. Covers graph construction
2 shared topics • 1 shared operation
DAS Tool — genome-resolved metagenomics bin refinement tool that integrates results from multiple binning algorithms to produce an optimized, non-redundant set of metagenome-assembled genomes (MAGs).
2 shared topics • 1 shared operation
MetaWRAP — flexible pipeline for genome-resolved metagenomic data analysis. Wraps read QC (trimming, host removal), metagenomic assembly (MEGAHIT, metaSPAdes), binning (MaxBin2, metaBAT2, CONCOCT), bi
2 shared topics • 1 shared operation
PacBio Revio tools — suite of command-line utilities for processing HiFi long reads generated by the PacBio Revio system. Covers CCS (circular consensus sequencing) generation with pbccs/ccs, demultip
2 shared topics • 1 shared operation