DAS Tool

Use when working with the ARTIC viral amplicon sequencing command-line pipeline for Oxford Nanopore data. Covers documented `artic minion`, `artic guppyplex`, and `artic_get_models` workflows for prim

2 shared topics • 1 shared operation

Use when building, querying, or manipulating colored compacted de Bruijn graphs (ccDBG) with Bifrost for genome assembly, metagenomics, variant detection, or k-mer analysis. Covers graph construction

2 shared topics • 1 shared operation

In-silico PCR (isPCR) simulates PCR amplification computationally by searching a genome or sequence database for products defined by primer pairs. Use for primer specificity checking, amplicon predict

2 shared topics • 1 shared operation

nf-core/viralrecon — Nextflow pipeline for viral genome reconstruction and analysis from sequencing data. Supports Illumina and Oxford Nanopore reads for SARS-CoV-2, influenza, and other viral genomes

2 shared topics • 1 shared operation

Oxford Nanopore Technologies (ONT) sequencing data analysis skill. Covers the end-to-end nanopore pipeline: basecalling raw POD5/FAST5 signal with Dorado, long-read alignment with Minimap2, haploid co

2 shared topics • 1 shared operation