Bifrost

nf-core/viralrecon — Nextflow pipeline for viral genome reconstruction and analysis from sequencing data. Supports Illumina and Oxford Nanopore reads for SARS-CoV-2, influenza, and other viral genomes

2 shared topics • 2 shared operations

Use when working with viral-ngs, Broad Institute viral genomics tooling, viral sequencing pipelines, pathogen read depletion, metagenomic classification, viral assembly, or intrahost/interhost variant

2 shared topics • 2 shared operations

Institute — utilities for discovering, querying, and downloading datasets from major genomics and bioinformatics research institutes, including Broad Institute (gnomAD, Terra, Hail), European Bioinfor

1 shared topic • 3 shared operations

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1 shared topic • 3 shared operations

Wm82-tools covers bioinformatics workflows for the Glycine max (soybean) Williams 82 (Wm82) reference genome — the primary reference for soybean genomics. Use cases: downloading and indexing Wm82 geno

1 shared topic • 3 shared operations