Institute

Wm82-tools covers bioinformatics workflows for the Glycine max (soybean) Williams 82 (Wm82) reference genome — the primary reference for soybean genomics. Use cases: downloading and indexing Wm82 geno

2 shared topics • 3 shared operations

Apache Arrow — cross-language columnar in-memory analytics format and ecosystem. Provides zero-copy IPC between Python, R, C++, Java, Go, and Rust via shared memory and the C Data Interface. Use for:

2 shared topics • 2 shared operations

CrossMap is a Python tool for genome coordinate liftover — converting genomic positions between different genome assemblies (e.g., hg19 to hg38, GRCh37 to GRCh38, mm9 to mm10). Supports BED, BAM/SAM/C

2 shared topics • 2 shared operations

dnaPipeTE (do not assemble - PipelinE for Transposable Elements) is a bioinformatics pipeline for estimating the proportion and landscape of transposable elements (TEs) and other repeats in a genome f

2 shared topics • 2 shared operations

UCSC (University of California Santa Cruz) Bioinformatics — comprehensive routing for all UCSC genomic tools and resources. Covers the UCSC Genome Browser, Table Browser, UCSC MySQL public database, G

2 shared topics • 2 shared operations