MetaWRAP

PacBio Revio tools — suite of command-line utilities for processing HiFi long reads generated by the PacBio Revio system. Covers CCS (circular consensus sequencing) generation with pbccs/ccs, demultip

2 shared topics • 2 shared operations

Use when working with abricate — ABRicate — mass screening of contigs

2 shared topics • 1 shared operation

antiSMASH (antibiotic & Secondary Metabolite Analysis SHell) — genome mining tool for identifying and annotating biosynthetic gene clusters (BGCs) in bacterial and fungal genomes. Detects NRPS, PKS, t

2 shared topics • 1 shared operation

BBDuk (Decontamination Using Kmers) — high-performance Java tool from the BBTools suite for adapter trimming, quality trimming, contaminant filtering, sequence masking, GC filtering, and format conver

2 shared topics • 1 shared operation

VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out

2 shared topics • 1 shared operation