Revio Tools

MetaWRAP — flexible pipeline for genome-resolved metagenomic data analysis. Wraps read QC (trimming, host removal), metagenomic assembly (MEGAHIT, metaSPAdes), binning (MaxBin2, metaBAT2, CONCOCT), bi

2 shared topics • 2 shared operations

nf-core/viralrecon — Nextflow pipeline for viral genome reconstruction and analysis from sequencing data. Supports Illumina and Oxford Nanopore reads for SARS-CoV-2, influenza, and other viral genomes

2 shared topics • 2 shared operations

Velvet — de Bruijn graph short-read genome assembler for Illumina, Solexa, and 454 sequencing data. Runs as a two-stage pipeline: velveth builds the hash table and de Bruijn graph, velvetg traverses t

3 shared topics

BBDuk (Decontamination Using Kmers) — high-performance Java tool from the BBTools suite for adapter trimming, quality trimming, contaminant filtering, sequence masking, GC filtering, and format conver

2 shared topics • 1 shared operation

ComplexHeatmap — R/Bioconductor package for creating highly customizable heatmaps with complex annotations. Supports row/column splitting, multiple annotation tracks (bar, box, point, histogram), Onco

2 shared topics • 1 shared operation