ComplexHeatmap

CPTAC pipelines — Python toolkit for accessing and analyzing Clinical Proteomic Tumor Analysis Consortium (CPTAC) multi-omics cancer data. Provides programmatic download of proteomics, phosphoproteomi

2 shared topics • 2 shared operations

Zarr — chunked, compressed N-dimensional array storage for large numerical datasets in bioinformatics and scientific computing. Supports cloud-native storage (S3, GCS, Azure), parallel read/write, and

2 shared topics • 2 shared operations

AGAT (Another Gff Analysis Toolkit) — comprehensive Perl toolkit for reading, writing, validating, fixing, and manipulating genome annotation files in GFF3, GTF, and GFF2 formats. Converts between for

2 shared topics • 1 shared operation

STAR-Fusion — detects candidate fusion transcripts from RNA-seq data using STAR alignments and the FusionInspector validation framework. Integrates with CTAT genome resource libraries for comprehensiv

2 shared topics • 1 shared operation

Trinity — de novo transcriptome assembler for RNA-seq data. Reconstructs full-length transcript isoforms without a reference genome using three sequential modules: Inchworm (greedy k-mer assembly), Ch

2 shared topics • 1 shared operation