Immcantation — integrated software suite for adaptive immune receptor repertoire (AIRR-seq) analysis of B-cell and T-cell receptors. Covers the full pipeline from raw FASTQ preprocessing (pRESTO) thro
Use with AI
Install the MCP server or CLI to instantly fetch Immcantation documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/immcantation
docker pull biocontainers/immcantation:4.4.0OGGM (Open Global Glacier Model) — modular open-source framework for simulating past and future glacier mass balance, volume, and geometry worldwide. Automates glacier-specific workflows from RGI outl
2 shared topics • 1 shared operation
RevBayes — Bayesian phylogenetic inference and evolutionary analysis using graphical probabilistic models and the Rev scripting language. Performs Bayesian MCMC-based phylogenetic tree estimation, div
2 shared topics • 1 shared operation
Roary — rapid large-scale prokaryotic pan genome analysis. Calculates the pan genome from annotated assemblies (GFF3 from Prokka/Bakta), producing core and accessory gene clusters, gene presence/absen
2 shared topics • 1 shared operation
BEASTIE (Bayesian Estimation of Allele-Specific Transcription Integrating Expression) — statistical framework for detecting allele-specific expression (ASE) from RNA-seq data. Uses a Bayesian hierarch
1 shared topic • 2 shared operations
RASQUAL (Robust Allele Specific QUantification and quality controL) — joint QTL mapping tool that integrates total read counts and allele-specific reads for cis-regulatory variant discovery. Detects i
1 shared topic • 2 shared operations