RevBayes — Bayesian phylogenetic inference and evolutionary analysis using graphical probabilistic models and the Rev scripting language. Performs Bayesian MCMC-based phylogenetic tree estimation, div
Use with AI
Install the MCP server or CLI to instantly fetch RevBayes documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/revbayes
OGGM (Open Global Glacier Model) — modular open-source framework for simulating past and future glacier mass balance, volume, and geometry worldwide. Automates glacier-specific workflows from RGI outl
2 shared topics • 2 shared operations
BEAST2 — Bayesian Evolutionary Analysis by Sampling Trees. Cross-platform Java application for Bayesian phylogenetic inference using MCMC sampling. Use when estimating time-calibrated phylogenies, rel
1 shared topic • 3 shared operations
Canopy — Bayesian phylogenetic reconstruction of tumor subclonal architecture from somatic SNVs and copy number alterations (CNAs). Uses MCMC sampling to infer cancer evolutionary trees, estimate subc
1 shared topic • 3 shared operations
MetaPhlAn 4 + StrainPhlAn 4 — marker-gene-based metagenomic profiling and strain-level phylogenetics. MetaPhlAn profiles microbial communities at species level from shotgun metagenomes using ~5.1M uni
1 shared topic • 3 shared operations
PhyML — maximum likelihood phylogenetic inference from nucleotide and amino acid sequence alignments. Supports GTR, HKY, K80, JC, and 15+ DNA/protein substitution models, gamma rate heterogeneity (+G)
1 shared topic • 3 shared operations