OGGM (Open Global Glacier Model)

RevBayes — Bayesian phylogenetic inference and evolutionary analysis using graphical probabilistic models and the Rev scripting language. Performs Bayesian MCMC-based phylogenetic tree estimation, div

2 shared topics • 2 shared operations

Gubbins — rapid phylogenetic analysis of recombinant bacterial whole genome sequences. Iteratively detects recombination hotspots with elevated SNP density while constructing clonal frame phylogenies.

2 shared topics • 1 shared operation

Immcantation — integrated software suite for adaptive immune receptor repertoire (AIRR-seq) analysis of B-cell and T-cell receptors. Covers the full pipeline from raw FASTQ preprocessing (pRESTO) thro

2 shared topics • 1 shared operation

Roary — rapid large-scale prokaryotic pan genome analysis. Calculates the pan genome from annotated assemblies (GFF3 from Prokka/Bakta), producing core and accessory gene clusters, gene presence/absen

2 shared topics • 1 shared operation

OrthoFinder — fast, accurate ortholog inference for comparative genomics. Identifies orthogroups, orthologs, gene trees, rooted species trees, and gene duplication events from protein or nucleotide se

1 shared topic • 2 shared operations