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RASQUAL (Robust Allele Specific QUantification and quality controL) — joint QTL mapping tool that integrates total read counts and allele-specific reads for cis-regulatory variant discovery. Detects i
Use with AI
Install the MCP server or CLI to instantly fetch RASQUAL documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/rasqual
Analyze bioinformatics sample metadata to auto-detect data modality, column semantics, and sequencing platform from CSV/TSV files, SRA RunTables, GEO Series Matrix files, and AnnData .obs exports. Inf
2 shared topics • 2 shared operations
BEASTIE (Bayesian Estimation of Allele-Specific Transcription Integrating Expression) — statistical framework for detecting allele-specific expression (ASE) from RNA-seq data. Uses a Bayesian hierarch
2 shared topics • 2 shared operations
Differential expression analysis for RNA-seq data using negative binomial generalized linear models with size factor normalization and empirical Bayes shrinkage.
2 shared topics • 2 shared operations
miRDeep2 — de novo microRNA (miRNA) discovery and quantification from small RNA-seq data. Identifies known and novel miRNAs by mapping collapsed reads to the genome, scoring hairpin structures, and co
2 shared topics • 2 shared operations
RNA-SeQC — fast C++ tool for RNA-seq quality control and gene-level quantification for large cohorts. Computes 70+ QC metrics including alignment rates, rRNA contamination, GC bias, 3'/5' coverage bia
1 shared topic • 3 shared operations