Analyze Sample Metadata

Aggregate bioinformatics analysis results from many samples and tools into a single report — supports 150+ tools including FastQC, STAR, HISAT2, and Samtools.

3 shared topics • 1 shared operation

Use when working with Rsubread, the Bioconductor R package for read alignment, exon junction discovery, feature counting, long-read mapping, annotation flattening, and alignment QC. Covers buildindex(

3 shared topics • 1 shared operation

nf-core/scrnaseq — Nextflow pipeline for single-cell RNA-seq quantification and preprocessing. Supports multiple alignment/quantification methods including Cell Ranger, STARsolo, Alevin-fry (Salmon),

2 shared topics • 2 shared operations

RASQUAL (Robust Allele Specific QUantification and quality controL) — joint QTL mapping tool that integrates total read counts and allele-specific reads for cis-regulatory variant discovery. Detects i

2 shared topics • 2 shared operations

Rcorrector — kmer-based error correction for RNA-seq reads. Corrects Illumina sequencing errors in FASTQ data using Jellyfish2 bloom filters and adaptive kmer frequency thresholds. Handles non-uniform

2 shared topics • 2 shared operations