DESeq2

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v1.44.0…Docs available

Differential gene expression analysis based on the negative binomial distribution. DESeq2 provides methods to test for differential expression using shrinkage estimation for dispersions and fold changes.

Bioconductor CoreBioContainersPublishedAdmin Reviewed

92trust score

FAIR

Homepage →View on bio.tools →License: LGPL-3.0

TranscriptomicsGene expressionDifferential expressionStatistical testing

Use with AI

Install the MCP server or CLI to instantly fetch DESeq2 documentation:

Install command

claude mcp add biocontext7 -- npx @biocontext7/mcp

Or share this page: biocontext7.com/tools/deseq2

EDAM Annotations

Installation

R

BiocManager::install("DESeq2")

conda

conda install -c bioconda bioconductor-deseq2

Container Images

quay.io

docker pull quay.io/biocontainers/bioconductor-deseq2:1.44.0--r43h3351234_0

Pipeline Integrations

nf-core/rnaseqnf-core

Version History

v1.44.02024-10-30
Bioconductor 3.19 release
v1.42.12024-04-01
v1.40.22023-10-15