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Finlay is a fast Triangle-Free Solver for undirected graphs, part of the Aegypti project. It detects, counts, and lists triangles in graphs provided in DIMACS or Boolean Adjacency Matrix formats. It p
Use with AI
Install the MCP server or CLI to instantly fetch Finlay documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/finlay
Cellpose — generalist deep learning algorithm for cellular and nuclear segmentation in microscopy images. Provides GPU-accelerated 2D and 3D instance segmentation using gradient flow representations,
1 shared topic
clusterProfiler — universal enrichment analysis tool for interpreting omics data using Gene Ontology, KEGG pathways, WikiPathways, Reactome, Disease Ontology, and custom gene sets. Implements over-rep
1 shared topic
Reactome — curated pathway knowledgebase and analysis platform for pathway enrichment, expression overlay, and species comparison. Use when user needs pathway over-representation analysis (ORA) with R
1 shared topic
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
1 shared topic
Query STRING API for protein-protein interaction networks, functional enrichment, and interaction partner discovery. Covers 59M proteins across 5000+ species with 20B+ scored interactions from 7 evide
1 shared topic