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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1340 | MNE-Python | Systems Biology | Systems Biology | 26.7 | +3% |
| 1677 | MNE-BIDS | Systems Biology | Systems Biology | 24.3 | +3% |
Data as of: Apr 12, 2026
| 256 |
| MMseqs2 |
| Phylogenetics |
| Phylogenetics |
| 38.8 |
| +8% |
| 1676 | MLflow | Machine Learning | Machine Learning | 24.3 | +3% |
| 664 | mixOmics | Systems Biology | Systems Biology | 35.74 | +8% |
| 1339 | MiXCR | Clinical Genomics | Clinical Genomics | 26.7 | +3% |
| 2054 | MitoFish | Metagenomics | Metagenomics | 15.3 | 0% |
| 1841 | missMDA | Population Genetics | Population Genetics | 21.9 | +3% |
| 983 | Missforest | Population Genetics | Population Genetics | 28.86 | +3% |
| 798 | miRDeep2 | Transcriptomics | Transcriptomics | 29.7 | +3% |