missMDA — R package for handling missing values in multivariate data analysis providing single imputation via iterative PCA (imputePCA for continuous data), MCA (imputeMCA for categorical data), FAMD
Use with AI
Install the MCP server or CLI to instantly fetch missMDA documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/missmda
CNVpytor — Python tool for copy number variation (CNV) detection from whole-genome sequencing (WGS) BAM/CRAM files. Analyzes read depth signals with adjustable bin sizes, calls deletions and duplicati
2 shared topics • 2 shared operations
COLOC (coloc) -- R package for Bayesian colocalization analysis of genetic associations. Tests whether two traits share a causal variant at a genomic locus using GWAS summary statistics. Implements co
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GREML (GCTA) — genome-based restricted maximum likelihood analysis for SNP heritability estimation, genetic correlation, mixed linear model association (MLMA), and COJO conditional analysis. Use when
2 shared topics • 2 shared operations
GWAS Catalog — EBI/NHGRI curated repository of genome-wide association study summary statistics, significant SNP-trait associations, and ancestry metadata. Query trait-SNP associations, download GWAS
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SuSiE (Sum of Single Effects) — R package for Bayesian variable selection and fine-mapping of GWAS loci. Fits a sparse regression model to identify credible sets of likely causal variants with posteri
2 shared topics • 2 shared operations