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MNE-BIDS — Python package for converting EEG, MEG, and iEEG (intracranial) electrophysiology data to the Brain Imaging Data Structure (BIDS) standard. Handles write_raw_bids() conversion, BIDSPath con
Use with AI
Install the MCP server or CLI to instantly fetch MNE-BIDS documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/mne-bids
AICSImageIO — Python library for reading and writing multi-dimensional microscopy image data. Supports CZI (Zeiss), LIF (Leica), ND2 (Nikon), OME-TIFF, TIFF, and DV formats via a unified AICSImage int
1 shared topic • 2 shared operations
Bio-Formats — Java library for reading and writing microscopy image formats. Supports 160+ file formats including OME-TIFF, CZI (Zeiss), LIF (Leica), ND2 (Nikon), VSI (Olympus), and proprietary vendor
1 shared topic • 2 shared operations
bioio — plugin-based Python library for reading and writing biological microscopy and imaging files. Supports OME-TIFF, CZI (Zeiss), LIF (Leica), nd2 (Nikon), TIFF, PNG, and many more formats via form
1 shared topic • 2 shared operations
NiBabel — Python library for reading and writing neuroimaging file formats. Supports NIfTI-1, NIfTI-2, ANALYZE, MINC1, MINC2, GIFTI, FreeSurfer MGH/MGZ, CIFTI-2, PARREC, and BrainVoyager formats. Core
1 shared topic • 2 shared operations
OpenSlide for digital pathology whole-slide imaging (WSI): inspect vendor formats, read tiles/regions, generate thumbnails, and build Deep Zoom outputs from SVS/NDPI/SCN/MRXS/DICOM slides. Use when us
1 shared topic • 2 shared operations