MitoFish

dnaPipeTE (do not assemble - PipelinE for Transposable Elements) is a bioinformatics pipeline for estimating the proportion and landscape of transposable elements (TEs) and other repeats in a genome f

3 shared topics • 1 shared operation

Use when working with resfinder — resFinder — command-line tool for identifying

3 shared topics • 1 shared operation

Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv

3 shared topics

Poetry is the Python dependency management and packaging tool for creating reproducible projects with pyproject.toml and poetry.lock. Use this skill for dependency resolution, virtual environment isol

3 shared topics

SOAPdenovo2 — de novo short-read genome assembler for large plant and animal genomes using de Bruijn graph construction. Runs a four-stage pipeline: pregraph (k-mer graph), contig (initial contigs), m

3 shared topics