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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 533 | Jellyfish | Genomics | Genomics | 35.8 | +8% |
| 534 | KEGG Tools | Utilities & Infrastructure | Utilities & Infrastructure | 35.8 | +8% |
| 535 | Leafcutter | Transcriptomics | Transcriptomics | 35.8 | +8% |
| 536 | Magic-BLAST | Genomics | Genomics | 35.8 | +8% |
| 537 | Matplotlib | Imaging | Imaging | 35.8 | +8% |
| 538 | MEGA (Molecular Evolutionary Genetics Analysis) | Phylogenetics | Phylogenetics | 35.8 | +8% |
| 539 | Megalodon | Genomics | Genomics | 35.8 | +8% |
| 540 | MELD -- Quantifying Perturbation Effects at Single-Cell Resolution | Single-Cell | Single-Cell | 35.8 | +8% |