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JBrowse 2 — modern React-based genome browser for interactive visualization of genomic data including BAM/CRAM alignments, VCF variants, BED/GFF annotations, BigWig signal tracks, Hi-C contact maps, a
Use with AI
Install the MCP server or CLI to instantly fetch JBrowse 2 documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/jbrowse2
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) — interactive visualization tool for de novo assembly graphs in GFA and FASTG formats. Visualize genome assembly gr
1 shared topic • 2 shared operations
Juicer — one-click Hi-C data processing pipeline that aligns paired-end FASTQ reads to a reference genome and produces .hic contact matrices for chromatin conformation analysis. Handles alignment (BWA
1 shared topic • 2 shared operations
NCBI Genome Data Viewer (GDV) — interactive web-based genome browser for exploring RefSeq genome assemblies with gene, variant, and functional annotation tracks. Supports URL-based navigation to speci
1 shared topic • 2 shared operations
Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem
1 shared topic • 1 shared operation
TCGAbiolinks for searching, downloading, and analyzing cancer genomics data from the NCI Genomic Data Commons (GDC). Routes tasks for GDCquery/GDCdownload, data preparation with GDCprepare, differenti
1 shared topic • 1 shared operation