Bandage

dnaPipeTE (do not assemble - PipelinE for Transposable Elements) is a bioinformatics pipeline for estimating the proportion and landscape of transposable elements (TEs) and other repeats in a genome f

2 shared topics • 1 shared operation

folium — interactive geospatial maps in Python. Create choropleth maps, marker clusters, heatmaps, and tile-layer maps using folium.Map(), add GeoJSON overlays with folium.GeoJson() and folium.Choropl

2 shared topics • 1 shared operation

Plotly — interactive graphing library for Python producing publication-quality figures as HTML, PNG, SVG, and PDF. Provides plotly.express for concise high-level charts (scatter, bar, line, heatmap, v

2 shared topics • 1 shared operation

SOAPdenovo2 — de novo short-read genome assembler for large plant and animal genomes using de Bruijn graph construction. Runs a four-stage pipeline: pregraph (k-mer graph), contig (initial contigs), m

2 shared topics • 1 shared operation

UCSC (University of California Santa Cruz) Bioinformatics — comprehensive routing for all UCSC genomic tools and resources. Covers the UCSC Genome Browser, Table Browser, UCSC MySQL public database, G

2 shared topics • 1 shared operation